LinkedSV – SV Detection on linked-read Sequencing data

LinkedSV

:: DESCRIPTION

LinkedSV is a novel structural variant caller for 10X Genomics (linked-read) sequencing data. It detects deletions, duplications, inversions and translocations using evidence from the barcoded reads.

::DEVELOPER

Wang Genomics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

LinkedSV

:: MORE INFORMATION

Citation

Fang L, Kao C, Gonzalez MV, Mafra FA, Pellegrino da Silva R, Li M, Wenzel SS, Wimmer K, Hakonarson H, Wang K.
LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.
Nat Commun. 2019 Dec 6;10(1):5585. doi: 10.1038/s41467-019-13397-7. PMID: 31811119; PMCID: PMC6898185.