Tag: LIMS

ProHits v4.0.3 – LIMS for Interaction Proteomics.

ProHits v4.0.3

:: DESCRIPTION

ProHits is an open source software package designed to help scientists store, search and analyze mass spectrometry data, in particular for protein-protein interaction experiments.

::DEVELOPER

Proteomics & Integrative Bioinformatics Lab

:: SCREENSHOTS

ProHits

:: REQUIREMENTS

  • Linux
  • PHP
  • Apache
  • MYSQL.

:: DOWNLOAD

 ProHits

:: MORE INFORMATION

Citation:

F. Liu et al., (2010)
ProHits: an integrated software platform for mass spectrometry-based interaction proteomics.
Nat Biotech, 28:1015-7

GNomEx – Genomic Experimental Data Repository and Core LIMS

GNomEx

:: DESCRIPTION

GNomEx provides a web accessible database and LIMS to organize and track the generation of raw genomic data, its associated downstream analysis, and to programmatically distribute the data to client applications such as IGB and the UCSC Genome Browser.

::DEVELOPER

The Bioinformatics Shared Resource

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 GNomEx

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2010 Sep 9;11:455. doi: 10.1186/1471-2105-11-455.
Next generation tools for genomic data generation, distribution, and visualization.
Nix DA1, Di Sera TL, Dalley BK, Milash BA, Cundick RM, Quinn KS, Courdy SJ.

OpenLabFramework v1.4.0 / OpenLabNotes – An open-source framework for Sample Management

OpenLabFramework v1.4.0

:: DESCRIPTION

OpenLabFramework is an open-source laboratory information management system (LIMS) intended for advanced sample management in small to mid-sized laboratories. It has been developed with focus on the management of vector clone and genetically engineered cell lines.

OpenLabNotes is an Electronic Laboratory Notebook Extension for OpenLabFramework.

::DEVELOPER

Baumbach lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

OpenLabFramework

:: MORE INFORMATION

Citation

OpenLabNotes–An Electronic Laboratory Notebook Extension for OpenLabFramework.
List M, Franz M, Tan Q, Mollenhauer J, Baumbach J.
J Integr Bioinform. 2015 Oct 6;12(3):274. doi: 10.2390/biecoll-jib-2015-274.

Efficient sample tracking with OpenLabFramework.
List M, Schmidt S, Trojnar J, Thomas J, Thomassen M, Kruse TA, Tan Q, Baumbach J, Mollenhauer J.
Sci Rep. 2014 Mar 4;4:4278. doi: 10.1038/srep04278.

Galaxy LIMS – LIMS for Next-generation Sequencing

Galaxy LIMS

:: DESCRIPTION

Galaxy LIMS is a laboratory information management system (LIMS) for a next-generation sequencing (NGS) laboratory within the existing Galaxy platform. The system provides lab technicians standard and customizable sample information forms, barcoded submission forms, tracking of input sample quality, multiplex-capable automatic flow cell design and automatically generated sample sheets to aid physical flow cell preparation.

::DEVELOPER

The Institute for Translational Oncology and Immunology(TrOn)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Galaxy LIMS

:: MORE INFORMATION

Citation

Bioinformatics. 2013 May 1;29(9):1233-4. doi: 10.1093/bioinformatics/btt115. Epub 2013 Mar 11.
Galaxy LIMS for next-generation sequencing.
Scholtalbers J, Rößler J, Sorn P, de Graaf J, Boisguérin V, Castle J, Sahin U.

Clone Manager 0.1 – Cloning and Protein Expression LIMS

Clone Manager 0.1

:: DESCRIPTION

Clone Manager – the PSF cloning and protein expression system (LIMS) is based on an Oracle database (v. 8.1.6) and a frontend developed with Microsoft Access 97. In addition, some perl scripts and Java programs are used for batch data entry.

::DEVELOPER

Protein Structure Factory

:: REQUIREMENTS

:: DOWNLOAD

Clone Manager

:: MORE INFORMATION

Please contact Konrad Büssow for questions/comments regarding this software.

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