SNPPIT 1.0 – Perform Fast and Accurate, Likelihood-based, Parentage Inference with SNPs

SNPPIT 1.0

:: DESCRIPTION

SNPPIT (SNP Program for Intergenerational Tagging)is a program for performing fast and accurate, likelihood-based, parentage inference with single nucleotide polymorphisms (SNPs). The software is tailored for inference of mother-father parent pairs, not for single parents. It takes a simple input file that includes the genotypes of the possible parents and of the offspring whose parentage is to be inferred. Parents in the parent database may come from multiple populations.

::DEVELOPER

Eric C. Anderson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX

:: DOWNLOAD

 SNPPIT

:: MORE INFORMATION

Citation

Anderson, Eric C.2010.
Computational algorithms and user-friendly software for parentage-based tagging of Pacific salmonids.
Final report submitted to the Pacific Salmon Commission’s Chinook Technical Committee (US Section). 46 p.

LEA / parLEA – Likelihood-based Estimation of Admixture

LEA / parLEA

:: DESCRIPTION

LEA (Likelihood-based estimation of admixture)is a program to simultaneously estimate admixture and the time since admixture

parLEA is a parallelized version of LEA.

::DEVELOPER

the Population and Conservation Genetics group , parLEA Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows

:: DOWNLOAD

 LEA / parLEA

:: MORE INFORMATION

Citation

Langella, Chikhi, Beaumont (2001),
LEA (Likelihood-based estimation of admixture): a program to simultaneously estimate admixture and the time since admixture“,
Molecular Ecology Notes, 1(4):357-358.

A novel parallel approach to the likelihood-based estimation of admixture in populatin genetics
Ambra Giovannini; Gaetano Zanghirati; Mark A. Beaumont; Lounes Chikhi; Guido Barbujani
Bioinformatics 2009 25: 1440-1441

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