Tag: LC-MS

MultiGlycan 1.0 – Annotation of Glycomic Profiles in the LC-MS data

MultiGlycan 1.0

:: DESCRIPTION

MultiGlycan helps user to gather glycan profile information from LC-MS Spectra. It also reports quantity of specific glycan composition.

::DEVELOPER

Haixu Tang

:: SCREENSHOTS

MultiGlycan

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 MultiGlycan

 :: MORE INFORMATION

Citation

Bioinformatics. 2013 Jul 1;29(13):1706-7. doi: 10.1093/bioinformatics/btt190. Epub 2013 Apr 22.
Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry.
Yu CY1, Mayampurath A, Hu Y, Zhou S, Mechref Y, Tang H.

MSAcquisitionSimulator 1.0.2 – Data-dependent Acquisition Simulator for LC-MS Shotgun Proteomics

MSAcquisitionSimulator 1.0.2

:: DESCRIPTION

MSAcquisitionSimulator is a collection of three command-line tools that simulate data-dependent acquisition algorithms on in silico generated ground truth data of liquid chromatography-mass spectrometry proteomics experiments.

::DEVELOPER

Major Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

MSAcquisitionSimulator

:: MORE INFORMATION

Citation

MSAcquisitionSimulator: data-dependent acquisition simulator for LC-MS shotgun proteomics.
Goldfarb D, Wang W, Major MB.
Bioinformatics. 2015 Dec 17. pii: btv745.

apLCMS 6.6.6 – adaptive processing of high resolution LC/MS data

apLCMS 6.6.6

:: DESCRIPTION

apLCMS is an R package which designed for the processing of LC/MS based metabolomics data. It starts with a group of LC/MS files in the same folder, and generates a table with features in the rows and intensities in the columns.

::DEVELOPER

Tianwei Yu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • R

:: DOWNLOAD

apLCMS

:: MORE INFORMATION

Citation

apLCMS–adaptive processing of high-resolution LC/MS data.
Yu T, Park Y, Johnson JM, Jones DP.
Bioinformatics. 2009 Aug 1;25(15):1930-6. doi: 10.1093/bioinformatics/btp291.

MetaboQC 1.0 – Evaluation of peak picking quality in LC-MS Metabolomics data

MetaboQC 1.0

:: DESCRIPTION

MetaboQC program is based on the analysis of discrepancies between replicate samples. It suggests the optimal parameters of peak-picking procedure and detects local discrepancies of the chromatogram alignment.

::DEVELOPER

Department of Plant Sciences,WIS

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 MetaboQC

:: MORE INFORMATION

Citation

Brodsky, L., Moussaieff, A., Shahaf, N., Aharoni, A. and Rogachev, I. (2010)
Evaluation of peak picking quality in LC-MS Metabolomics data.
Analytical Chemistry, 82 :9177-9187.