LAPD – Estimate Maximum Likelihood Allele and two-locus Haplotype Frequencies

LAPD

:: DESCRIPTION

LAPD (Linkage Analysis Using Pedigree Data) allows to estimate maximum likelihood allele and two-locus haplotype frequencies, using an Expectation-Maximization algorithm, taking into account family relationships of the individuals.

::DEVELOPER

Computational and Molecular Population Genetics Lab, University of Bern

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 LAPD

:: MORE INFORMATION

Citation

Excoffier, L. and Slatkin, M. (1998)
Incorporating genotypes of relatives into a test of linkage disequilibrium,
Am. J. Hum. Genet. 162:171-180.

LAPD – Estimate Protein Distances

LAPD

:: DESCRIPTION

LAPD estimates pairwise distances for a set of protein sequences. The output can be used in conjunction with other phylogeny programs.

::DEVELOPER

Lars Arvestad

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ windows/MacOsX
  • Perl

:: DOWNLOAD

LAPD Source Code

:: MORE INFORMATION

lapd is distributed under the GNU General Public License.