kSNP 3.1.2
:: DESCRIPTION
kSNP identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/MacOsX
:: DOWNLOAD
:: MORE INFORMATION
Citation
kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.
Gardner SN, Slezak T, Hall BG.
Bioinformatics. 2015 Sep 1;31(17):2877-8. doi: 10.1093/bioinformatics/btv271.
PLoS One. 2013 Dec 9;8(12):e81760. doi: 10.1371/journal.pone.0081760. eCollection 2013.
When whole-genome alignments just won’t work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes.
Gardner SN, Hall BG.