Tag: JBrowse

PhyloTrack 2.1 – D3.js and JBrowse for Phylogeny and Positioning of Samples

PhyloTrack 2.1

:: DESCRIPTION

PhyloTrack is a JavaScript–based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation.

::DEVELOPER

PhyloTrack team

:: SCREENSHOTS

PhyloTrack

::REQUIREMENTS

  • Linux
  • Perl
  • JavaScript

:: DOWNLOAD

 PhyloTrack

:: MORE INFORMATION

Citation

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.
Benavente ED, Coll F, Furnham N, McNerney R, Glynn JR, Campino S, Pain A, Mohareb FR, Clark TG.
BMC Bioinformatics. 2015 May 13;16:155. doi: 10.1186/s12859-015-0603-3.

JBrowse2 1.3 – JavaScript Genome Browser

 JBrowse2 1.3

:: DESCRIPTION

JBrowse is a JavaScript genome browser with an emphasis on portability. JBrowse helps preserve the user’s sense of location by avoiding discontinuous transitions, instead offering smoothly animated panning, zooming, navigation, and track selection. Unlike most existing genome browsers, where the genome is rendered into images on the webserver and the role of the client is restricted to displaying those images, JBrowse distributes work between the server and client and therefore uses significantly less server overhead than previous genome browsers.

::DEVELOPER

Holmes lab at UC Berkeley

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

JBrowse

:: MORE INFORMATION

Citation:

JBrowse: a next-generation genome browser.
Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH.
Genome Res. 2009 Sep;19(9):1630-8. doi: 10.1101/gr.094607.109