TraceView 2.01 – Java Applet for viewing Sequence Traces

TraceView 2.01

:: DESCRIPTION

TraceView is a set of trace viewing tools with each component filling a different software niche.

::DEVELOPER

Jeremy Parsons

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 TraceView

:: MORE INFORMATION

Citation

Genome Res. 1999 Mar;9(3):277-81.
DNA sequence chromatogram browsing using JAVA and CORBA.
Parsons JD, Buehler E, Hillier L.

SStructView 1.2.2 – RNA Secondary Structure Viewing Java Applet

SStructView 1.2.2

:: DESCRIPTION

SStructView is a Java applet for viewing RNA secondary structures and linking to multiple computational backends. SStructView supports colored bases, standard mouse selection mechanisms (drag to select a range, control-click to select individuals), arbitrary set-based data types to allow you to create your own groups, and other improvements.RNA biologists who want an extendible java application for viewing RNA secondary structure.

::DEVELOPER

Ramon M. Felciano, Richard Chen and Russ Altman, Helix Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • Java

:: DOWNLOAD

SStructView

:: MORE INFORMATION

Citation

R. M. Felciano, R. O. Chen, & R. B. Altman.
RNA Secondary Structure as a Reusable Interface to Biological Information Resources.
Gene 190 (1997) GC59-70

QuickPDB 20021101 – Java Applet for quickly viewing PROTEIN PDB Structure

QuickPDB 20021101

:: DESCRIPTION

QuickPDB permits you to find and quickly review a macromolecular structure looking at interactions between sequence and structure. Typically, once you have located structure(s) of interest you would download then for further analysis using local programs. QuickPDB is also available from the View Structure section of the Structure Explorer page for any entry in the Protein Data Bank .

::DEVELOPER

the Bourne Laboratory

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/Linux/MacOsX.
  • Java

:: DOWNLOAD

  QuickPDB

:: MORE INFORMATION