iRefIndex 14 / iRefScape 1.18 / iRefR 1.13
:: DESCRIPTION
iRefIndex provides an index of protein interactions available in a number of primary interaction databases including BIND, BioGRID, CORUM, DIP, HPRD, InnateDB, IntAct, MatrixDB, MINT, MPact, MPIDB, MPPI and OPHID.
iRefScape is a plugin for Cytoscape that exposes iRefIndex data as a navigable graphical network.
iRefR is an R package that provides access to iRefIndex.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/Linux/MacOsX
- R package / Cytoscape / Matlab
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
iRefIndex: a consolidated protein interaction database with provenance.
Razick S, Magklaras G, Donaldson IM.
BMC Bioinformatics. 2008 Sep 30;9:405.
BMC Bioinformatics. 2011 Oct 5;12:388.
iRefScape. A Cytoscape plug-in for visualization and data mining of protein interaction data from iRefIndex.
Razick S, Mora A, Michalickova K, Boddie P, Donaldson IM.
Antonio Mora and Ian M Donaldson
iRefR: an R package to manipulate the iRefIndex consolidated protein interaction database.
BMC Bioinformatics 2011, 12:455