Tag: Inverse

ILbind – Consensus-based Inverse Ligand Binding Predictor

ILbind

:: DESCRIPTION

ILbind is a consensus predictor that combines the two complementary inverse ligand binding predictors implemented using FINDSITE and SMAP and Support Vector Machines.

::DEVELOPER

Kurgan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 ILbind

:: MORE INFORMATION

Citation

Hu G, Gao J, Wang K, Mizianty MJ, Ruan J, Kurgan L.
Finding protein targets for small biologically relevant ligands across fold space using inverse ligand binding predictions.
Bioinformatics. 2014 Aug 28. pii: btu581. [Epub ahead of print]

fRNAkenstein 20130115 – Python program for Multiple Target Inverse RNA Folding

fRNAkenstein 20130115

:: DESCRIPTION

Frnakenstein is a python program for solving the inverse RNA folding problem, i.e. given a target structure it attempts to design a sequence folding into this stucture.

:: DEVELOPER

James W. J. Anderson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Python

:: DOWNLOAD

 fRNAkenstein

:: MORE INFORMATION

BMC Bioinformatics. 2012 Oct 9;13(1):260.
Frnakenstein: multiple target inverse RNA folding.
Lyngsoe RB, Anderson JW, Sizikova E, Badugu A, Hyland T, Hein J.