Tag: Intron

AlignExIn 20130624 – Alignment Exon Intron Structure

AlignExIn 20130624

:: DESCRIPTION

AlignExIn ( Align Exon Intron) is a handy and useful utility built in order to display the alignment of exons. The program displays the exon painted in red and the alignments painted in blue by default, but it is possible to change the colors.All you have to do is select the input files (fasta and exon) and the program will do the rest.

::DEVELOPER

Institute of Bioinformatics WWU Muenster

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 alignexin

:: MORE INFORMATION

IRFinder-S v2.0-beta – Detecting Intron Retention

IRFinder-S v2.0-beta

:: DESCRIPTION

IRFinder-S is a suite of tools to analyse and explore intron retention events in multiple samples.

::DEVELOPER

the Center for Genomic Medicine of Massachusetts General Hospital

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R
  • Perl

:: DOWNLOAD

IRFinder-S

:: MORE INFORMATION

Citation

Lorenzi C, Barriere S, Arnold K, Luco RF, Oldfield AJ, Ritchie W.
IRFinder-S: a comprehensive suite to discover and explore intron retention.
Genome Biol. 2021 Nov 8;22(1):307. doi: 10.1186/s13059-021-02515-8. PMID: 34749764.

Middleton R, Gao D, Thomas A, Singh B, Au A, Wong JJ, Bomane A, Cosson B, Eyras E, Rasko JE, Ritchie W.
IRFinder: assessing the impact of intron retention on mammalian gene expression.
Genome Biol. 2017 Mar 15;18(1):51. doi: 10.1186/s13059-017-1184-4. PMID: 28298237; PMCID: PMC5353968.