InterProScan 5.39-77.0 – Protein Domains Identifier

InterProScan 5.39-77.0

:: DESCRIPTION

InterProScan is a tool that combines different protein signature recognition methods into one resource. The number of signature databases and their associated scanning tools, as well as the further refinement procedures, increases the complexity of the problem.

::DEVELOPER

EBI

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 InterProScan

:: MORE INFORMATION

Citation

Bioinformatics. 2014 May 1;30(9):1236-40. doi: 10.1093/bioinformatics/btu031. Epub 2014 Jan 21.
InterProScan 5: genome-scale protein function classification.
Jones P1, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, Lopez R, Hunter S.

Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R.
InterProScan: protein domains identifier
Nucleic Acids Res. 2005;33:W116-W120.

IPRStats 0.4.2 – Visualization of Interproscan Results

IPRStats 0.4.2

:: DESCRIPTION

IPRStats is a tool for the visualization of Interproscan results. Interproscan results are parsed from the Interproscan XML or EBIXML file into an SQLite or MySQL database. The results for each signature database scan are read and displayed as pie-charts or bar charts as summary statistics.

IPRStats Online Version

::DEVELOPER

Iddo Friedberg

:: SCREENSHOTS

IPRStats

:: REQUIREMENTS

  • Windows/ MacOsX / Linux
  • Python

:: DOWNLOAD

 IPRStats

:: MORE INFORMATION

Citation:

Kelly RJ, Vincent DE, Friedberg I.
IPRStats: visualization of the functional potential of an InterProScan run.
BMC Bioinformatics. 2010 Dec 21;11 Suppl 1.S13