CNT-ILP – Integer Linear Program for the Copy-Number Tree Problem

CNT-ILP

:: DESCRIPTION

CNT-ILP implements a integer-linear program (ILP) for solving the Copy-Number Tree (CNT) problem. This problem aims to infer the copy-number tree of minimum cost from the copy-number profiles of distinct tumor clones.

::DEVELOPER

Raphael Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++

:: DOWNLOAD

CNT-ILP

:: MORE INFORMATION

Citation:

El-Kebir M, Raphael BJ, Shamir R, Sharan R, Zaccaria S, Zehavi M, Zeira R.
Complexity and algorithms for copy-number evolution problems.
Algorithms Mol Biol. 2017 May 16;12:13. doi: 10.1186/s13015-017-0103-2. PMID: 28515774; PMCID: PMC5433102.