AutoMatrix
:: DESCRIPTION
AutoMatrix is a Matlab script that will calculate an instantaneous rate matrix (and its eigen value decompostion for use in phylip programs) from a series of substitution count matrices calculated for different levels of sequence identity/similarity.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- MatLab
:: DOWNLOAD
:: MORE INFORMATION
Citation:
A transition probability model for amino acid substitutions from BLOCKS
Shalini Veerassamy, Andrew Smith and Elisabeth R. M. Tillier,
J. Computational Biology (2003) 10(6): 997-1010