MetaMapR 1.4 – Pathway Independent Metabolomic Network Analysis Incorporating Unknowns

MetaMapR 1.4

:: DESCRIPTION

MetaMapR integrates enzymatic transformations with metabolite structural similarity, mass spectral similarity and empirical associations to generate richly connected metabolic networks.

::DEVELOPER

Dmitry Grapov

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows
  • R

:: DOWNLOAD

 MetaMapR

:: MORE INFORMATION

Citation

MetaMapR: Pathway Independent Metabolomic Network Analysis Incorporating Unknowns.
Grapov D, Wanichthanarak K, Fiehn O.
Bioinformatics. 2015 Apr 5. pii: btv194.

MIM – Motif Independent Metric

MIM

:: DESCRIPTION

MIM calculates a measure of sequence specificity called Motif Independent Metric.

::DEVELOPER

Guo-CHeng Yuan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • Python

:: DOWNLOAD

 MIM 

:: MORE INFORMATION

Citation

A motif-independent metric for DNA sequence specificity.
Pinello L, Lo Bosco G, Hanlon B, Yuan GC.
BMC Bioinformatics. 2011 Oct 21;12:408.