:: DESCRIPTION
Snippy finds SNPs between a haploid reference genome and your NGS sequence reads (handles reads >500bp long). It will find both substitutions and insertions/deletions (indels).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
PriVar is a cross-platform Java application toolkit to prioritize variants (SNVs and InDels) from exome or whole genome sequencing data by using different filtering strategies and information of external databases.
::DEVELOPER
WANLING YANG’S GROUP IN BIOINFORMATICS @ University of Hong Kong
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Jan 1;29(1):124-5. doi: 10.1093/bioinformatics/bts627. Epub 2012 Oct 25.
PriVar: a toolkit for prioritizing SNVs and indels from next-generation sequencing data.
Zhang L1, Zhang J, Yang J, Ying D, Lau YL, Yang W.
:: DESCRIPTION
Indelz is bioinformatics method to predict the effects of indels and non-sense mutations Link to software.
::DEVELOPER
Alan Moses’ Computational Biology Lab ,University of Toronto
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Ranking insertion, deletion and nonsense mutations based on their effect on genetic information
Amin Zia, Alan M Moses
BMC Bioinformatics. 2011; 12: 299.
