Tag: Immunofluorescence

FLINO – ImmunoFLuorescence Image NOrmalization

FLINO

:: DESCRIPTION

FLINO repository provides R-scripts and data to perform and evaluate image normalizations methods and workflows.

::DEVELOPER

FLINO team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R
:: DOWNLOAD

FLINO

:: MORE INFORMATION

Citation

Graf J, Cho S, McDonough E, Corwin A, Sood A, Lindner A, Salvucci M, Stachtea X, Van Schaeybroeck S, Dunne PD, Laurent-Puig P, Longley D, Prehn JHM, Ginty F.
FLINO-A new method for immunofluorescence bioimage normalization.
Bioinformatics. 2021 Oct 2:btab686. doi: 10.1093/bioinformatics/btab686. Epub ahead of print. PMID: 34601553.

spatialTIME 1.2.0 / iTIME – Visualization and Analysis of Immunofluorescence data

spatialTIME 1.2.0 / iTIME

:: DESCRIPTION

spatialTIME (Spatial Analysis of Vectra Immunoflourescent Data) is to perform basic analysis and plotting of IF data from Vectra.

iTIME (interactive Tumor Immune MicroEnvironment) is a shiny application that creates interactive figures for examining spatial organization of individual tumors and provide basic spatial and summary information.

::DEVELOPER

Fridley Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux
  • R

:: DOWNLOAD

spatialTIME  / iTIME

:: MORE INFORMATION

Citation:

Creed JH, Wilson CM, Soupir AC, Colin-Leitzinger CM, Kimmel GJ, Ospina OE, Chakiryan NH, Markowitz J, Peres LC, Coghill A, Fridley BL.
spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data.
Bioinformatics. 2021 Nov 4:btab757. doi: 10.1093/bioinformatics/btab757. Epub ahead of print. PMID: 34734969.