Bisque 0.5.8 – Platform for Bioimage Analysis & Management

Bisque 0.5.8

:: DESCRIPTION

Bisque (Bio-Image Semantic Query User Environment) was developed for the exchange and exploration of biological images. The Bisque system supports several areas useful for imaging researchers from image capture to image analsysis and querying. The bisque system is centered around a database of images and metadata. Search and comparison of datasets by image data and content is supported. Novel semantic analyses are integrated into the system allowing high level semantic queries and comparison of image content.

::DEVELOPER

The Center for Bio-Image Informatics

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Bisque

:: MORE INFORMATION

Citation:

Kristian Kvilekval, Dmitry Fedorov, Boguslaw Obara, Ambuj Singh and B.S. Manjunath,
Bisque: A Platform for Bioimage Analysis and Management
Bioinformatics, vol. 26, no. 4, pp. 544-552, Feb. 2010.

Digital Notebook 1.2.28 – Image Management & Annotation

Digital Notebook 1.2.28

:: DESCRIPTION

Digital Notebook is designed to simplify the image annotation process. It allows researchers to create meta-data required by the bio-image database. It can also update, print and upload existing information.

Digital Notebook is a digital notebook for biologists to manage image collections and related metadata both on their local machines and for integrating with the BISQUE database. The Digital Notebook eases the management and creation of metadata descriptions of large volumes of images by using domain knowledge to relieve the biologist of repetetive tasks. The metadata entry system is fully customizable to the specific need of an image set through an editable XML config file that stores information about what metadata fields are necessary for a certain class of images as well as default and common values for those fields. The Digital Notebook also has a built in file browser for easily navigating sets of images kept in separate folders. It can read JPEG, TIFF, and PNG formatted image files and stores the metadata in a companion XML file next to the image.

::DEVELOPER

The Center for Bio-Image Informatics

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Bisque

:: DOWNLOAD

Digital Notebook

:: MORE INFORMATION

Citation:

Kristian Kvilekval, Dmitry Fedorov, Boguslaw Obara, Ambuj Singh and B.S. Manjunath,
Bisque: A Platform for Bioimage Analysis and Management
Bioinformatics, vol. 26, no. 4, pp. 544-552, Feb. 2010.

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