SVGMap 1.5.1 – Image Browser for Experimental data

SVGMap 1.5.1

:: DESCRIPTION

The aim of SVGMap is helping in the visualisation of experimental data which are associated with some graphical representation. Thus SVGMap browser allows to generate images with colored areas corresponding to the chosen data and color scale.

::DEVELOPER

Biomedical Genomics Group at the Biomedical Research Park in Barcelona (PRBB)

:: SCREENSHOTS

:: REQUIREMENTS

Windows/Linux / MacOsX
Java

:: DOWNLOAD

SVGMap

:: MORE INFORMATION

Citation

Rafael-Palou X, Schroeder MP and Lopez-Bigas N.
SVGMap: configurable image browser for experimental data
Bioinformatics (2012) 28(1):119-20.

FRETSaw 1.0 – Image Browser for Examining Pairs of images generated by a FRET experiment

FRETSaw 1.0

:: DESCRIPTION

FRETSaw is a specialised image browser for examining pairs of images generated by a FRET experiment. It also creates a colourised image showing the differences between the source images.

:: DEVELOPER

Babraham Bioinformatics

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Mac OsX/Windows
Java

:: DOWNLOAD

FRETSaw

:: MORE INFORMATION

FocalPoint 0.6 – Image Browser designed to work with more Complex Image Type

FocalPoint 0.6

:: DESCRIPTION

FocalPoint is an image browser which provides enhanced functionality for images with multiple frames or channels. It works with all standard image types as well as a number of specialised microscopy formats.

:: DEVELOPER

Babraham Bioinformatics

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Mac OsX/Windows
Java

:: DOWNLOAD

FocalPoint

:: MORE INFORMATION

CellH5 / CellH5Browser 1.1 – Format for Data Exchange in High-content screening / Image Browser

CellH5 / CellH5Browser 1.1

:: DESCRIPTION

CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs

CellH5Browser is an interactive gallery image browser based on the CellH5 data format. For testing download a CellH5 example data set for the CellH5Browser from a time-lapse microscopy dataset.

::DEVELOPER

CellH5 team

:: SCREENSHOTS

:: REQUIREMENTS

Windows / Linux / MacOsX
R pacakge/ MatLab / Python

:: DOWNLOAD

CellH5 / CellH5Browser

:: MORE INFORMATION

Citation:

Bioinformatics. 2013 Jun 15;29(12):1580-2. doi: 10.1093/bioinformatics/btt175. Epub 2013 Apr 16.
CellH5: a format for data exchange in high-content screening.
Sommer C1, Held M, Fischer B, Huber W, Gerlich DW.