HybridCheck v1.0.1 – Hybridisation Recombination and Introgression Detection and Dating

HybridCheck v1.0.1

:: DESCRIPTION

HybridCheck is a software package to visualise the recombination signal in large DNA sequence dataset, and it can be used to analyse recombination, genetic introgression, hybridisation and horizontal gene transfer.

::DEVELOPER

HybridCheck team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R

:: DOWNLOAD

  HybridCheck

:: MORE INFORMATION

Citation

Mol Ecol Resour. 2015 Sep 23. doi: 10.1111/1755-0998.12469. [Epub ahead of print]
HybridCheck: software for the rapid detection, visualisation and dating of recombinant regions in genome sequence data.
Ward BJ, van Oosterhout C.

RNAhybrid 2.1.2 – Find Minimum Free Energy Hybridisation of RNA

RNAhybrid 2.1.2

:: DESCRIPTION

RNAhybrid is a tool for finding the minimum free energy hybridisation of a long and a short RNA.The hybridisation is performed in a kind of domain mode, ie. the short sequence is hybridised to the best fitting part of the long one. The tool is primarily meant as a means for microRNA target prediction.

::DEVELOPER

RNAhybrid team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX/ Windows

:: DOWNLOAD

RNAhybrid

:: MORE INFORMATION

Citation

Marc Rehmsmeier , Peter Steffen, Matthias Höchsmann, Robert Giegerich
Fast and effective prediction of microRNA/target duplexes
RNA, 10:1507-1517, 2004.