FpClass – Interactions and Properties of Human Proteins

FpClass

:: DESCRIPTION

FpClass is a data mining-based method for proteome-wide PPI prediction.

::DEVELOPER

Jurisica Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Perl

:: DOWNLOAD

FpClass

:: MORE INFORMATION

Citation

In silico prediction of physical protein interactions and characterization of interactome orphans.
Kotlyar M, Pastrello C, Pivetta F, Lo Sardo A, Cumbaa C, Li H, Naranian T, Niu Y, Ding Z, Vafaee F, Broackes-Carter F, Petschnigg J, Mills GB, Jurisicova A, Stagljar I, Maestro R, Jurisica I.
Nat Methods. 2015 Jan;12(1):79-84. doi: 10.1038/nmeth.3178.

CarSPred 1.0 – Predicting Carbonylation Sites of Human Proteins

CarSPred 1.0

:: DESCRIPTION

The software CarSPred could be used to identify carbonylation sites of query human protein sequences.

::DEVELOPER

Jun LIU

:: SCREENSHOTS

:: REQUIREMENTS

Windows

:: DOWNLOAD

CarSPred

:: MORE INFORMATION

Citation

CarSPred: a computational tool for predicting carbonylation sites of human proteins.
Lv H, Han J, Liu J, Zheng J, Liu R, Zhong D.
PLoS One. 2014 Oct 27;9(10):e111478. doi: 10.1371/journal.pone.0111478.

mLASSO-Hum – Human Protein Subcellular Localization

mLASSO-Hum

:: DESCRIPTION

mLASSO-Hum is an interpretable multi-label predictor which can yield sparse and interpretable solutions for large-scale prediction of human protein subcellular localization.

::DEVELOPER

Dr. Man-Wai Mak

:: SCREENSHOTS

N/A

::REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

J Theor Biol. 2015 Oct 7;382:223-34. doi: 10.1016/j.jtbi.2015.06.042. Epub 2015 Jul 9.
mLASSO-Hum: A LASSO-based interpretable human-protein subcellular localization predictor.
Wan S, Mak MW, Kung SY.

NetNGlyc 1.0 – N-linked glycosylation sites in human proteins

NetNGlyc 1.0

:: DESCRIPTION

NetNglyc server predicts N-Glycosylation sites in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons.

::DEVELOPER

DTU Health Tech

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

NetNGlyc

:: MORE INFORMATION

Citation

Prediction of N-glycosylation sites in human proteins.
R. Gupta, E. Jung and S. Brunak.
In preparation, 2004.

HSLpred – SVM based method for Teh Subcellular Localization of Human Proteins

HSLpred

:: DESCRIPTION

HSLpred allows predicting the subcellulare localization of human proteins. This is based on various type of residue composition of proteins using SVM technique

::DEVELOPER

HSLpred team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Aarti Garg, Manoj Bhasin, and Gajendra P. S. Raghava (2005).
SVM-based method for subcellular localization of human proteins using amino acid compositions, their order and similarity search.
J. Biol. Chem. 280:14427-32.