:: DESCRIPTION
WHAMM is a free, open-source analysis package designed to estimate patterns of homozygosity in whole genome data sets, as well as perform a range of association analyses and summaries on the resultant output.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
ROHan is a Bayesian framework to estimate local rates of heterozygosity, infer runs of homozygosity (ROH) and compute global rates of heterozygosity outside of ROHs. ROHan can work on modern and ancient samples with signs of ancient DNA damage.
::DEVELOPER
The Centre for Anthropobiology and Genomics of Toulouse
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Renaud G, Hanghoj K, Korneliussen TS, Willerslev E, Orlando L.
Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.
Genetics. 2019 Jul;212(3):587-614. doi: 10.1534/genetics.119.302057. Epub 2019 May 14. PMID: 31088861; PMCID: PMC6614887.
:: DESCRIPTION
hzAnalyzer is a new R package that we have developed for detection, quantification, and visualization of homozygous segments/ROH in high-density SNP datasets.
::DEVELOPER
Laboratory for Medical Science Mathematics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genome Biol. 2011;12(3):R21. doi: 10.1186/gb-2011-12-3-r21. Epub 2011 Mar 11.
hzAnalyzer: detection, quantification, and visualization of contiguous homozygosity in high-density genotyping datasets.
Johnson TA, Niimura Y, Tanaka H, Nakamura Y, Tsunoda T.
:: DESCRIPTION
Rehh is an R package to search for footprints of selection using Haplotype Homozygosity based tests
::DEVELOPER
Centre de Biologie et Gestion des Populations (CBGP)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure.
Gautier M, Vitalis R.
Bioinformatics. 2012 Apr 15;28(8):1176-7. doi: 10.1093/bioinformatics/bts115.
