SMI-BLAST v1 – Search framework based on PSI-BLAST for protein remote homology detection

SMI-BLAST v1

:: DESCRIPTION

SMI-BLAST (Supervised-Manner-based Iterative BLAST) is a novel supervised search framework based on PSI-BLAST for protein remote homology detection.

::DEVELOPER

Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

SMI-BLAST

:: MORE INFORMATION

Citation

Jin X, Liao Q, Wei H, Zhang J, Liu B.
SMI-BLAST: a novel supervised search framework based on PSI-BLAST for protein remote homology detection.
Bioinformatics. 2021 May 17;37(7):913-920. doi: 10.1093/bioinformatics/btaa772. PMID: 32898222.

:: DESCRIPTION

PL-search is a profile link based search method for protein remote homology detection

::DEVELOPER

Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

PL-search

:: MORE INFORMATION

Citation

Jin X, Liao Q, Liu B.
PL-search: a profile-link-based search method for protein remote homology detection.
Brief Bioinform. 2021 May 20;22(3):bbaa051. doi: 10.1093/bib/bbaa051. PMID: 32427287.

:: DESCRIPTION

DistanceSVM is the method of Using distances between Top-n-gram and residue pairs for protein remote homology detection.

::DEVELOPER

Bin Liu’s lab,

:: SCREENSHOTS

n/a

:: REQUIREMENTS

:: DOWNLOAD

DistanceSVM

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014;15 Suppl 2:S3. doi: 10.1186/1471-2105-15-S2-S3. Epub 2014 Jan 24.
Using distances between Top-n-gram and residue pairs for protein remote homology detection.
Liu B, Xu J, Zou Q, Xu R, Wang X, Chen Q.