HH-suite v3.3.0 – Remote Protein Homology Detection suite

HH-suite v3.3.0

:: DESCRIPTION

The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

::DEVELOPER

Söding Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows

:: DOWNLOAD

 HH-suite

:: MORE INFORMATION

Citation

PLoS Comput Biol. 2015 Oct 23;11(10):e1004343. doi: 10.1371/journal.pcbi.1004343. eCollection 2015.
Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling.
Meier A, Söding J

Steinegger M, Meier M, Mirdita M, Vöhringer H, Haunsberger S J, and Söding J (2019)
HH-suite3 for fast remote homology detection and deep protein annotation,
BMC Bioinformatics, 473. doi: 10.1186/s12859-019-3019-7

HMMSeg – Scale-specific Segmention of Continuous Genomic data using HMMs

HMMSeg

:: DESCRIPTION

HMMSeg performs wavelet smoothing and unsupervised HMM segmentation on genomic data sets.

::DEVELOPER

Noble Research Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows /MacOsX
  • Java

:: DOWNLOAD

  HMMSeg

:: MORE INFORMATION

Citation:

Nathan Day ,Andrew Hemmaplardh, Robert E. Thurman2, John A. Stamatoyannopoulos and William S. Noble
Unsupervised segmentation of continuous genomic data,
Bioinformatics 2007 23:1424-1426