Tag: HLA typing

seq2HLA 2.3 – HLA typing from RNA-Seq sequence reads

seq2HLA 2.3

:: DESCRIPTION

seq2HLA is a software for obtaining an individual’s human leukocyte antigen (HLA) class I and II type and expression using standard next generation sequencing RNA-Seq data.

::DEVELOPER

The Institute for Translational Oncology and Immunology(TrOn)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows /  Mac OsX / Linux
  • Python / R package

:: DOWNLOAD

 seq2HLA

:: MORE INFORMATION

Citation

Genome Med. 2013 Dec 22;4(12):102. [Epub ahead of print]
HLA typing from RNA-Seq sequence reads.
Boegel S, Löwer M, Schäfer M, Bukur T, de Graaf J, Boisguérin V, Türeci O, Diken M, Castle JC, Sahin U.

HLAreporter 1.03 – HLA Typing from Next Generation Sequencing data

HLAreporter 1.03

:: DESCRIPTION

HLAreporter (HLA reporter) is a novel tool  for HLA typing from NGS data based on read-mapping using a comprehensive reference panel containing all known HLA alleles, followed by de novo assembly of the gene-specific short reads.

::DEVELOPER

WANLING YANG’S GROUP IN BIOINFORMATICS @ University of Hong Kong

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux

:: DOWNLOAD

 HLAreporter

:: MORE INFORMATION

Citation

HLAreporter: a tool for HLA typing from next generation sequencing data.
Huang Y, Yang J, Ying D, Zhang Y, Shotelersuk V, Hirankarn N, Sham PC, Lau YL, Yang W.
Genome Med. 2015 Mar 16;7(1):25. doi: 10.1186/s13073-015-0145-3.