HIPPO 1.0/ AEML 1.0 – Estimate Population Haplotype Frequencies from Pooled SNP data

HIPPO 1.0/ AEML 1.0

:: DESCRIPTION

Hippo (Haplotype estimation under incomplete prior information using pooled observations) is a program for estimating haplotype distribution from pooled DNA data and is able to utilize prior information about the haplotypes that are known to be present in the population.

AEML is a program for estimating haplotype distribution from pooled DNA data and is able to utilize prior information about the haplotypes that are known to be present in the population.

::DEVELOPER

Matti Pirinen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • GCC

:: DOWNLOAD

  HIPPO  – AEML Source Code

:: MORE INFORMATION

Citation

Matti Pirinen
Estimating population haplotype frequencies from pooled SNP data using incomplete database information
Bioinformatics (2009) 25 (24): 3296-3302

HIPPO 1.5.0 – Heterogeneity Inspired pre-processing Tool

HIPPO 1.5.0

:: DESCRIPTION

HIPPO is a novel framework that leverages zero proportions to explain cellular heterogeneity and integrates feature selection with iterative clustering.

::DEVELOPER

Chen Group at U Chicago

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX

:: DOWNLOAD

HIPPO

:: MORE INFORMATION

Citation

Kim TH, Zhou X, Chen M.
Demystifying “drop-outs” in single-cell UMI data.
Genome Biol. 2020 Aug 6;21(1):196. doi: 10.1186/s13059-020-02096-y. PMID: 32762710; PMCID: PMC7412673.

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