HIPPIE 0.0.2b – High-Throughput Identification Pipeline for Promoter Interacting Enhancer elements

HIPPIE 0.0.2b

:: DESCRIPTION

HIPPIE is the workflow for analyzing Hi-C paired-end reads in FASTQ format and predict enhancer–target gene interactions. HIPPIE streamlines the entire processing phase including reads mapping, quality control and enhancer–target gene prediction as well as characterizing the interactions.

::DEVELOPER

Wang Lab @ IBI

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

HIPPIE

:: MORE INFORMATION

Citation

HIPPIE: A high-throughput identification pipeline for promoter interacting enhancer elements.
Hwang YC, Lin CF, Valladares O, Malamon J, Kuksa P, Zheng Q, Gregory BD, Wang LS.
Bioinformatics. 2014 Dec 4. pii: btu801.

HIPPIE 2.2 – study and filter the Network of Human Protein-protein Interaction data

HIPPIE 2.2

:: DESCRIPTION

HIPPIE (Human Integrated Protein-Protein Interaction rEference) is a human PPI dataset with a normalized scoring scheme that integrates multiple experimental PPI datasets.

::DEVELOPER

Computational Biology and Data Mining (CBDM) Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
Java

:: DOWNLOAD

HIPPIE

:: MORE INFORMATION

Citation

HIPPIE v2.0: enhancing meaningfulness and reliability of protein-protein interaction networks.
Alanis-Lobato G, Andrade-Navarro MA, Schaefer MH.
Nucleic Acids Res. 2017 Jan 4;45(D1):D408-D414. doi: 10.1093/nar/gkw985

PLoS One. 2012;7(2):e31826. doi: 10.1371/journal.pone.0031826. Epub 2012 Feb 14.
HIPPIE: Integrating protein interaction networks with experiment based quality scores.
Schaefer MH1, Fontaine JF, Vinayagam A, Porras P, Wanker EE, Andrade-Navarro MA.

HIPPIE – Protease Inhibitor engine

HIPPIE

:: DESCRIPTION

HIPPIE (Hybrid Inhibitors-Proteases Proteases-Inhibitors Engine) is a web server computational approach for detecting peptidases and their specific inhibitors.

::DEVELOPER

Bologna Biocomputing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

No. Only Web Service

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S3.
A computational approach for detecting peptidases and their specific inhibitors at the genome level.
Bartoli L, Calabrese R, Fariselli P, Mita DG, Casadio R.