Tilescope 2.0 – Online Analysis Pipeline for High-density Tiling Microarray data

Tilescope 2.0

:: DESCRIPTION

Tilescope is a fully integrated data processing pipeline for analyzing tiling array data. In a completely automated fashion, it will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features.

::DEVELOPER

ZDZ lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux /Windows / MacOsX
Java

:: DOWNLOAD

Tilescope

:: MORE INFORMATION

Citation

Genome Biol. 2007;8(5):R81.
Tilescope: online analysis pipeline for high-density tiling microarray data.
Zhang ZD1, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M.

HighMap – Construction and Analysis of High-density Linkage Map

HighMap

:: DESCRIPTION

HighMap software is suitable for genetic map. This software utilized maximum likelihood and smooth algorithm, and could deal with ten thousand markers that make map distance more stably.

::DEVELOPER

Biomarker Technologies Corporation

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation:

Construction and analysis of high-density linkage map using high-throughput sequencing data.
Liu D, Ma C, Hong W, Huang L, Liu M, Liu H, Zeng H, Deng D, Xin H, Song J, Xu C, Sun X, Hou X, Wang X, Zheng H.
PLoS One. 2014 Jun 6;9(6):e98855. doi: 10.1371/journal.pone.0098855.

Hybsweeper 02 – Detect High-density Plate Gridding Coordinates

Hybsweeper 02

:: DESCRIPTION

Hybsweeper was developed to handle images of high-density gridding patterns which were matched to clones housed in microtiter dishes. As high-throughput methodologies contribute to large archives of stored clone resources, methods need to be available for convenient processing of hybridization information for the retrieval of the clones needed for research endeavors. A Java software package, Hybsweeper, was developed to select clone identities from autoradiographs which were generated through simple probing methods, overgo probe hybridizations, and isolation of unique clones from saturation hybridization.

::DEVELOPER

Gerard R. Lazo

:: SCREENSHOTS

:: REQUIREMENTS

Linux/Windows/MacOsX
Java

:: DOWNLOAD

Hybsweeper

:: MORE INFORMATION

Citation

Gerard R. Lazo, Nancy Lui, Yong Q. Gu, Xiuying Kong, Devin Coleman-Derr, and Olin D. Anderson.
Hybsweeper: a resource for detecting high-density plate gridding coordinates
BioTechniques (2005) 39:320-324.