:: DESCRIPTION
mCarts is a hidden Markov model (HMM)-based methods to predict clusters RNA motif sites.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2013 Aug;41(14):6793-807. doi: 10.1093/nar/gkt421. Epub 2013 May 18.
Prediction of clustered RNA-binding protein motif sites in the mammalian genome.
Zhang C1, Lee KY, Swanson MS, Darnell RB.
:: DESCRIPTION
scHMM (correlated hidden Markov models) is a package for analyzing sequence read count data in multiple ChIPseq experiments using sparsely correlated hidden Markov models (HMM).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2013 Mar 1;29(5):533-41. doi: 10.1093/bioinformatics/btt012. Epub 2013 Jan 16.
Sparsely correlated hidden Markov models with application to genome-wide location studies.
Choi H1, Fermin D, Nesvizhskii AI, Ghosh D, Qin ZS.
:: DESCRIPTION
HaMStR (Hidden Markov Model based Search for Orthologs using Reciprocity)is a Hidden Markov Model based search tool to screen EST sequence data for the presence of putative orthologs to a pre-defined set of genes.
::DEVELOPER
the Center of Integrative Bioinformatics Vienna (CIBIV) headed by Arndt von Haeseler.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
BMC Evol Biol. 2009 Jul 8;9:157.
HaMStR: profile hidden markov model based search for orthologs in ESTs.
Ebersberger I, Strauss S, von Haeseler A.
:: DESCRIPTION
NLStradamus predicts NLSs in nuclear proteins that are transported by the import machinery of the cell.
::DEVELOPER
Alan Moses’ Computational Biology Lab
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2009 Jun 29;10:202. doi: 10.1186/1471-2105-10-202.
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction.
Nguyen Ba AN1, Pogoutse A, Provart N, Moses AM.
:: DESCRIPTION
HMMEditor (HMMVE) is a visual editor for profile Hidden Markov Model (pHMM)
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
J. Dai and J. Cheng.
HMMEditor: A Visual Editing Tool for Profile Hidden Markov Model.
BMC Genomics. 9(S1):S8, 2008.
:: DESCRIPTION
iHMMune-align is an alignment tool designed specifically for modelling the antibody generation process and identifying the constituent germline genes of a human heavy chain mature variable region sequence, in order to generate an alignment of the rearranged immunoglobulin sequence with its germline genes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gaeta BA, Malming HR, Jackson KJ, Bain ME, Wilson P, Collins AM (2007)
iHMMune-align: Hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences.
Bioinformatics 23:1580-1587
