:: DESCRIPTION
HiCseg allows you to detect domains in HiC data by rephrasing this problem as a two-dimensional segmentation issue.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Two-dimensional segmentation for analyzing Hi-C data.
Lévy-Leduc C, Delattre M, Mary-Huard T, Robin S.
Bioinformatics. 2014 Sep 1;30(17):i386-i392. doi: 10.1093/bioinformatics/btu443.
:: DESCRIPTION
HiCPlotter is a Python data visualization tool for integrating different data types with interaction matrixes.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
HiCPlotter integrates genomic data with interaction matrices.
Akdemir KC, Chin L.
Genome Biol. 2015 Sep 21;16(1):198.
:: DESCRIPTION
HiSIF is a novel computational software tool on Hi-C data analysis, including a Poisson Mixture Model, with an Expectation Maximization algorithm (EM) followed by a power-law decay background model to filter background-ligation events.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Zhou Y, Cheng X, Yang Y, Li T, Li J, Huang TH, Wang J, Lin S, Jin VX.
Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops.
Genome Med. 2020 Aug 12;12(1):69. doi: 10.1186/s13073-020-00769-8. PMID: 32787954; PMCID: PMC7425017.
