pairheatmap 1.0.1 – A tool for Comparing Heatmaps

pairheatmap 1.0.1

:: DESCRIPTION

pairheatmap is a tool to compare two heatmaps and discover patterns within and across groups.

::DEVELOPER

Xiaoyong Sun <johnsunx1 at gmail.com>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • R

:: DOWNLOAD

 pairheatmap

:: MORE INFORMATION

Citation:

Comput Methods Programs Biomed. 2013 Dec;112(3):599-606. doi: 10.1016/j.cmpb.2013.07.010. Epub 2013 Sep 6.
pairheatmap: comparing expression profiles of gene groups in heatmaps.
Sun X1, Li J.

HemI 1.0.1 – Heatmap Illustrator

HemI 1.0.1

:: DESCRIPTION

HemI is a novel software to prepare publication-quality figures of heatmap. A heatmap is a graphical representation of data where the individual values contained in a matrix are represented as colors.

::DEVELOPER

The CUCKOO Workgroup

:: SCREENSHOTS

HemI

:: REQUIREMENTS

  • Linux / WIndows / MacOsX
  • Java

:: DOWNLOAD

 HemI

:: MORE INFORMATION

Citation

PLoS One. 2014 Nov 5;9(11):e111988. doi: 10.1371/journal.pone.0111988. eCollection 2014.
HemI: A Toolkit for Illustrating Heatmaps.
Deng W, Wang Y, Liu Z, Cheng H, Xue Y.

jHeatmap 1.1.0 – Create interactive Heatmaps on the Web

jHeatmap 1.1.0

:: DESCRIPTION

jHeatmap  is a java framework to create interactive heatmaps on the web.

::DEVELOPER

Biomedical Genomics Group

:: SCREENSHOTS

jHeatmap

:: REQUIREMENTS

  • Web Browser
  • Java

:: DOWNLOAD

 jHeatmap

:: MORE INFORMATION

Citation

Deu-Pons J, Schroeder MP, Lopez-Bigas N.
jHeatmap: an interactive heatmap viewer for the web.
Bioinformatics. 2014 Feb 23. doi: 10.1093/bioinformatics/btu094

HeatmapGenerator 5 – Create Customized Gene Expression Heatmaps

HeatmapGenerator 5

:: DESCRIPTION

HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields.

::DEVELOPER

Bohdan Khomtchouk

:: SCREENSHOTS

HeatmapGenerator

:: REQUIREMENTS

  • Windows / MacOSX

:: DOWNLOAD

 HeatmapGenerator

:: MORE INFORMATION

Citation:

HeatmapGenerator: high performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline.
Khomtchouk BB, Van Booven DJ, Wahlestedt C.
Source Code Biol Med. 2014 Dec 24;9(1):30. doi: 10.1186/s13029-014-0030-2.

Clustergrammer 1.19.5 – Web-based Heatmap Visualization and Analysis Tool for High-Dimensional Biological Data

Clustergrammer 1.19.5

:: DESCRIPTION

Clustergrammer is a web-based visualization tool with interactive features such as: zooming, panning, filtering, reordering, sharing, performing enrichment analysis, and providing dynamic gene annotations.

::DEVELOPER

Ma’ayan Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

Clustergrammer

:: MORE INFORMATION

Citation

Sci Data. 2017 Oct 10;4:170151. doi: 10.1038/sdata.2017.151.
Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data.
Fernandez NF, Gundersen GW, Rahman A, Grimes ML, Rikova K, Hornbeck P, Ma’ayan A.

HeatMapper 1.1 – Draws Heatmaps and Displays Clinical data next to the Heatmap

HeatMapper 1.1

:: DESCRIPTION

HeatMapper is an easy-to-use program that draws heatmaps and displays clinical data next to the heatmap. HeatMapper also has the ability to save the heatmap and clinical data as a picture.

::DEVELOPER

 The Department of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 HeatMapper

:: MORE INFORMATION

Citation

Roel GW Verhaak et al.
HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteristics
BMC Bioinformatics 2006, 7:337