Ligate Haplotypes 0.04
:: DESCRIPTION
Ligate Haplotypes is a perl software to ligate haplotypes with two overlapping regions
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows / MacOsX
- Perl
:: MORE INFORMATION
:: DESCRIPTION
Ligate Haplotypes is a perl software to ligate haplotypes with two overlapping regions
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
:: DESCRIPTION
Concatenate Haplotypes is a software which concatenates two sets of haplotypes
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
:: DESCRIPTION
HAPLOCLUSTERS is a program designed to detect excess haplotypes sharing in datasets consisting of case and control haplotypes. Excess haplotype sharing can be seen around disease loci in case samples since LD persists longer here than in the controls where LD is persisting only according to the relatedness of the individuals in the population, i.e. the age of the population. This LD is often referred to as background LD.
::DEVELOPER
Melanie Bahlo (bahlo@wehi.edu.au) @ WEHI Bioinformatics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bahlo M, Stankovich J, Speed TP, Rubio JP, Burfoot RK, Foote SJ.
Detecting genome wide haplotype sharing using SNP or microsatellite haplotype data.
Hum Genet. 2006 Mar;119(1-2):38-50.
:: DESCRIPTION
TREESCAN is intended to provide p-values for the hypothesis of association between evolutionary clades and continuous traits, using haplotype trees.
::DEVELOPER
Phylogenomics Group at the University of Vigo
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Posada D, Maxwell TJ, Templeton AR.
TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.
Bioinformatics 2005 21 (9): 2130-2132.doi: 10.1093/bioinformatics/bti29
:: DESCRIPTION
HaploPowerCalc is a tool for estimating power to detect disease association by a set of markers (e.g. a tag SNP panel or SNPs on an array), at any user-specified polymorphic site(s), under arbitrary disease model and sample sizes. It is intended for users who wish to estimate the power (or sample sizes required to obtain adequate power) in their association study. HaploPowerCalc uses an approach based on haplotype-sampling.
::DEVELOPER
Dr. Deborah Nickerson’s lab at the University of Washington
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
N/A