SPANDx 3.2 – Comparative Analysis of Haploid Next-generation Re-sequencing data

SPANDx 3.2

:: DESCRIPTION

SPANDx (Synergised Pipeline for Analysis of NGS Data in Linux) is a versatile and customisable tool for the processing of large NGS datasets from raw reads to comparative analysis into a single tool.

::DEVELOPER

Dr Derek Sarovich

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SPANDx

:: MORE INFORMATION

Citation

BMC Res Notes. 2014 Sep 8;7:618. doi: 10.1186/1756-0500-7-618.
SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets.
Sarovich DS1, Price EP.

maxhap – Estimating Cross-over and Gene Ronversion Rates from Haploid (phased) Polymorphism data

maxhap

:: DESCRIPTION

maxhap is a program for estimating rho (4Nr), a crossing-over parameter, and f (= g/r) a gene conversion parameter using a maximum composite likelihood method

::DEVELOPER

Richard R. Hudson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

  maxhap

:: MORE INFORMATION

Citation:

Hudson, R. R. (2001)
Two-locus sampling distributions and their application. 
Genetics 159: 1805-1817