HAPAA 1.0 – HMM-based Analysis of Polymorphisms in Admixed Ancestries

HAPAA 1.0

:: DESCRIPTION

HAPAA is a novel approach for ancestry inference that models the allelic and haplotypic variation in the populations and captures the signal of correlation due to linkage disequilibrium, resulting in greatly improved accuracy.

::DEVELOPER

Serafim’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 HAPAA

:: MORE INFORMATION

Citation

Genome Res. 2008 Apr;18(4):676-82. doi: 10.1101/gr.072850.107.
Effect of genetic divergence in identifying ancestral origin using HAPAA.
Sundquist A, Fratkin E, Do CB, Batzoglou S.

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