:: DESCRIPTION
WU-CRISPR is the Washington University gRNA designer for CRISPR/Cas9 knockouts.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
WU-CRISPR: characteristics of functional guide RNAs for the CRISPR/Cas9 system.
Wong N, Liu W, Wang X.
Genome Biol. 2015 Nov 2;16(1):218. doi: 10.1186/s13059-015-0784-0.
:: DESCRIPTION
rNA (randomized Numerical Aligner) is a software able to align the huge amount of data produced by Next Generation Sequencers. The main feature of rNA is the fact that it achieves an accuracy greater than the majority of other tools in a feasible amount of time. rNA works with single as well as paired ends reads and it allows indels and delta-search for better accuracy.
mrNA is the MPI version of the original rNA program.
grNA is a graphical front-end for rNA
::DEVELOPER
bioinformatics team at Istituto di Genomica Applicata (Applied Genomics Institute) andDepartment of Mathematics and Informatics, University of Udine.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
rNA: a Fast and Accurate Short Reads Numerical Aligner
Vezzi F., Del Fabbro C., Tomescu A.I., and Policriti A.
Bioinformatics, 2011, doi:10.1093/bioinformatics/btr617
mrNA: the MPI randomized Numerical Aligner
Del Fabbro C., Vezzi F., and Policriti A.
Proceedings of 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2011), Atlanta (Georgia), November 12-15, 2011, IEEE Computer Society 0:139-142, ISBN 978-0-7695-4574-5
