Grape 1.1.0 – Pipeline for Processing and Analyzing RNA-Seq data

Grape 1.1.0

:: DESCRIPTION

The Grape RNAseq Analysis Pipeline Environment implements a set of workflows that allow for easy exploration of RNA-Seq data.

::DEVELOPER

Guigo Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Grape

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Mar 1;29(5):614-21. doi: 10.1093/bioinformatics/btt016. Epub 2013 Jan 17.
Grape RNA-Seq analysis pipeline environment.
Knowles DG, Röder M, Merkel A, Guigó R.

GRaPe 1.0 – Generation of Generic Rate Equations for all Reactions in a Model

GRaPe 1.0

:: DESCRIPTION

GRaPe (Gene Reaction Protein Builder) was developed to enable the generation of generic rate equations for all reactions in a model. It encompasses an algorithm for estimating the concentration of proteins for a reaction to reach a particular steady state when kinetic parameters are unknown, and two robust methods for parameter estimation. It also allows for the seamless integration of gene expression or protein levels into a reaction and can generate equations for both transcription and translation.

::DEVELOPER

Pathways and biological systems modelling group , The University of Manchester

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

GRaPe

:: MORE INFORMATION

Citation

Adiamah DA, Handl J, Schwartz JM (2010).
Streamlining the construction of large-scale dynamic models using generic kinetic equations.
Bioinformatics 26: 1324-31.

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