Tag: GQL

GQL – Using Genome Query Language to uncover Genetic Variation

GQL

:: DESCRIPTION

GQL (Genome Query Language) allows for the efficient querying of genomic fragment data to uncover evidence for variation in the sampled genomes.

::DEVELOPER

Christos Kozanitis

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • C++ Compiler

:: DOWNLOAD

 GQL

:: MORE INFORMATION

Citation:

Bioinformatics. 2014 Jan 1;30(1):1-8. doi: 10.1093/bioinformatics/btt250. Epub 2013 Jun 10.
Using Genome Query Language to uncover genetic variation.
Kozanitis C1, Heiberg A, Varghese G, Bafna V.

GQL 1.0 – GHMM-based tool for Querying and Clustering Gene-Expression time-course data

GQL 1.0

:: DESCRIPTION

GQL (Graphical Query Language) is a suite of tools for analyizing time-course experiments. Currently, it is adapted to gene expression data. The two main tools are GQLQuery, for querying data sets, and GQLCluster, which provides a way for computing groupings based on a number of methods (model-based clustering using HMMs as cluster models and estimation of a mixture of HMMs).

::DEVELOPER

Alexander Schliep’s group for bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 GQL

:: MORE INFORMATION

Citation

Bioinformatics. 2005 May 15;21(10):2544-5. Epub 2005 Feb 8.
The Graphical Query Language: a tool for analysis of gene expression time-courses.
Costa IG, Schönhuth A, Schliep A.