CateGOrizer 3.218 – Gene Ontology (GO) Terms Classifications Tool

CateGOrizer 3.218

:: DESCRIPTION

CateGOrizer, previously known as “GO Terms Classifications Counter”, is a free web tool for users to batch analyze GO term data sets in terms of GO classes they represent.

::DEVELOPER

NAGRP Bioinformatics Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Zhi-Liang Hu, Jie Bao and James M. Reecy (2008)
CateGOrizer: A Web-Based Program to Batch Analyze Gene Ontology Classification Categories“.
Online J Bioinform. 9 (2):108-112.

simDEF – Definition-based Semantic Similarity Measure of GO Terms for Functional Similarity Analysis of Genes

simDEF

:: DESCRIPTION

simDEF is an efficient method for measuring semantic similarity of GO terms using their GO definitions.

::DEVELOPER

Beiko lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

  simDEF

:: MORE INFORMATION

Citation:

simDEF: Definition-based Semantic Similarity Measure of Gene Ontology Terms for Functional Similarity Analysis of Genes.
Pesaranghader A, Matwin S, Sokolova M, Beiko RG.
Bioinformatics. 2015 Dec 26. pii: btv755.