MEIGO / MEIGO-M 20140703 / MEIGO-R 0.99.6 / pymeigo 1.0.0 – MEtaheuristics for bIoinformatics Global Optimization

MEIGO / MEIGO-M 20140703 / MEIGO-R 0.99.6 / pymeigo 1.0.0

:: DESCRIPTION

MEIGO is a global optimization toolbox that includes a number of metaheuristic methods as well as (currently in the R version only) a Bayesian inference method for parameter estimation

MEIGO-M (Matab version)

MEIGO-R (R version)

pymeigo is a python package that provides a python interface to the optimisation tool MEIGOR

::DEVELOPER

(Bio)Process Engineering group, IIM-CSIC

:: REQUIREMENTS

  • Linux /Windows/MacOsX
  • R/ MatLab/ Python

:: DOWNLOAD

MEIGO-M / MEIGO-R / pymeigo

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 May 10;15:136. doi: 10.1186/1471-2105-15-136.
MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.
Egea JA, Henriques D, Cokelaer T, Villaverde AF, MacNamara A, Danciu DP, Banga JR1, Saez-Rodriguez J.

AMIGO2 R2019b – Advanced Modelling and Identification using Global Optimization

AMIGO2 R2019b

:: DESCRIPTION

AMIGO is a multi-platform (Windows and Linux) toolbox which covers all the steps of the iterative identification procedure: local and global sensitivity analysis, local and global ranking of parameters, parameter estimation, identifiability analysis and optimal experimental design.

::DEVELOPER

(Bio)Process Engineering group, IIM-CSIC

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux /MacOsX
  • Matlab

:: DOWNLOAD

 AMIGO

:: MORE INFORMATION

Citation:

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology.
Balsa-Canto E, Henriques D, Gabor A, Banga JR.
Bioinformatics. 2016 Jul 4. pii: btw411.

Bioinformatics (2011)doi: 10.1093/bioinformatics/btr370 First published online: June 17, 2011
AMIGO, a toolbox for Advanced Model Identification in systems biology using Global Optimization
Eva Balsa-Canto and Julio R. Banga

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