:: DESCRIPTION
RL-CSA is a tool for regular-language constrained pairwise global sequence alignment
::DEVELOPER
Michal Ziv-Ukelson’s Research Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Kucherov, G., Pinhas, T., Ziv-Ukelson, M.:
Regular Language Constrained Sequence Alignment Revisited,
J Comput Biol. 2011 May;18(5):771-81.
:: DESCRIPTION
LocARNA is a package of tools for producing fast and high-quality pairwise and multiple alignment of RNA sequences. It uses a complex RNA energy model for simultaneous folding and sequence/structure alignment of the RNAs. LocARNA performs global, sequence local, or even structurally local alignment of the molecules.
::DEVELOPER
Bioinformatics Group
Albert-Ludwigs-University Freiburg
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2014 Dec 31;15(1):6602. [Epub ahead of print]
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.
Otto C, Möhl M, Heyne S, Amit M, Landau GM, Backofen R, Will S.
RNA. 2012 May;18(5):900-14. doi: 10.1261/rna.029041.111. Epub 2012 Mar 26.
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs.
Will S1, Joshi T, Hofacker IL, Stadler PF, Backofen R.
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
Cameron Smith, Steffen Heyne, Andreas S. Richter, Sebastian Will, Rolf Backofen
In: Nucleic Acids Research, 2010, 38 Suppl, W373-7
:: DESCRIPTION
GLOBAL (GLObal Blocks Aligned Locally) gives the statistical significance of semi-global block alignments.
::DEVELOPER
Statistical Computational Biology Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
M.G. Kann, S.L. Sheetlin, Y. Park, S.H. Bryant, and J.L. Spouge
“The identification of complete domains within protein sequences using accurate E-values for semi- global alignment”
(2007) Nucl Acids Res 35 : 4678-4685
