GIST 0.3 – Detect Association between Marker Genotypes and IBD sharing at the same locus

GIST 0.3

:: DESCRIPTION

The GIST (Genotype-IBD Sharing Test) is a method for detecting association between marker genotypes and IBD sharing at the same locus.  Such an association will indicate that the marker itself, or one in linkage disequilibrium with it, could account for the observed linkage signal (at least partially).  The software can be used to analyze affected sibship data.

::DEVELOPER

Chun Li

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux/Windows

:: DOWNLOAD

GIST

:: MORE INFORMATION

Citation

Li C, Scott LJ, Boehnke M. (2004)
Assessing Whether an Allele Can Account in Part for a Linkage Signal: The Genotype-IBD Sharing Test (GIST).
Am. J. Hum. Genet. 74:418-431

Gist 0.7.17 – Generative Inference of Sequence Taxonomy

Gist 0.7.17

:: DESCRIPTION

Gist began as a project to develop a sequence classifier based on arbitrary input classes, and has developed into a high-precision, noise-tolerant taxonomic classifier focused specifically on the problem of annotating short (76 nt and higher), unassembled reads with little or no quality filtering

::DEVELOPER

Parkinson Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Gist

:: MORE INFORMATION