:: DESCRIPTION
The cgatools (Complete Genomics Analysis Tools) is an open source project to provide tools for downstream analysis of Complete Genomics data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Gemma is an open-source database and software system for the meta-analysis of gene expression data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2009 Jun 15;25(12):1543-9. Epub 2009 Apr 17.
Application and evaluation of automated semantic annotation of gene expression experiments.
French L, Lane S, Law T, Xu L, Pavlidis P.
:: DESCRIPTION
MizBee is a multiscale synteny browser for exploring conservation relationships in comparative genomics data. Using side-by-side linked views, MizBee enables efficient data browsing across a range of scales, from the genome to the gene.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
IEEE Trans Vis Comput Graph. 2009 Nov-Dec;15(6):897-904. doi: 10.1109/TVCG.2009.167.
MizBee: a multiscale synteny browser.
Meyer M, Munzner T, Pfister H.
:: DESCRIPTION
GIMM implements Bayesian infinite mixtures clustering procedures. The software consists of the R package gimmR and the self-standing software WinGimm.
:: DEVELOPER
Laboratory for Statistical Genomics, Univ. Cincinnati
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2006 Jul 15;22(14):1737-44. Epub 2006 May 18.
Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset.
Liu X, Sivaganesan S, Yeung KY, Guo J, Bumgarner RE, Medvedovic M.
BMC Bioinformatics. 2007 Aug 3;8:283.
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data.
Liu X, Jessen WJ, Sivaganesan S, Aronow BJ, Medvedovic M.
