GAP 2009 – Mining complex Cancer Genomic Profiles

GAP 2009

:: DESCRIPTION

GAP (Genome Alteration Print) is a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays

::DEVELOPER

Tatiana Popova, Institut Curie, Paris

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Mac OsX
  • R package

:: DOWNLOAD

 GAP

:: MORE INFORMATION

Citation

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.
Popova T, Manié E, Stoppa-Lyonnet D, Rigaill G, Barillot E, Stern MH.
Genome Biol. 2009;10(11):R128. doi: 10.1186/gb-2009-10-11-r128.

Statius – Prediction of Individualized Therapeutic Vulnerabilities in Cancer from Genomic Profiles

Statius

:: DESCRIPTION

Statius is a web-based tool prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles

::DEVELOPER

Computational Biology Center @ Memorial Sloan Kettering Cancer Center

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles.
Aksoy BA, Demir E, Babur Ö, Wang W, Jing X, Schultz N, Sander C.
Bioinformatics. 2014 Jul 15;30(14):2051-9. doi: 10.1093/bioinformatics/btu164.

PRECOG / iPRECOG – PREdiction of Clinical Outcomes from Genomic Profiles

PRECOG / iPRECOG

:: DESCRIPTION

PRECOG is a system for querying associations between genomic profiles and cancer outcomes. It enables researchers to query whether, for example, high expression of a gene is prognostic for shorter or longer patient survival.

iPRECOG – an immune-oriented view and analysis of PRECOG.

::DEVELOPER

Newman Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nat Med, 21 (8), 938-945 Aug 2015
The Prognostic Landscape of Genes and Infiltrating Immune Cells Across Human Cancers
Andrew J Gentles et al.