GDPC 2.0 – Access to Genomic Diversity and Phenotype data

GDPC 2.0

:: DESCRIPTION

GDPC ( Genomic Diversity and Phenotype Connection) simplifies access to genomic diversity and phenotype data, thereby encouraging reuse of this data. GDPC accomplishes this by retrieving data from one or more data sources and by allowing researchers to analyze integrated data in a standard format. GDPC provides access to genomic diversity data such as SNPs, SSRs, sequences, etc. and phenotypic data that may be collected in field, genetic, or physiological experiments.

::DEVELOPER

The Buckler Lab

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX
Java

:: DOWNLOAD

GDPC

:: MORE INFORMATION

Citation

GDPC: connecting researchers with multiple integrated data sources.
Casstevens TM, Buckler ES.
Bioinformatics. 2004 Nov 1;20(16):2839-40. Epub 2004 Apr 22.

fastsimcoal2 2.6.0.2 – Continuous-time Coalescent Simulator of Genomic Diversity

fastsimcoal2 2.6.0.2

:: DESCRIPTION

fastsimcoal is a new coalescent-based simulation program, which is able to quickly simulate a variety of genetic markers scattered over very long genomic regions with arbitrary recombination patterns under complex evolutionary scenarios.

::DEVELOPER

Computational and Molecular Population Genetics Lab, University of Bern

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Linux / MacOsX
C++ Compiler

:: DOWNLOAD

fastsimcoal

:: MORE INFORMATION

Citation

Excoffier, L. and Foll, M (2011)
fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
Bioinformatics (2011)doi: 10.1093/bioinformatics/btr124