QuantileMap – Visualization of Compactlydemonstrate Multiple Distributions in Genomic Applications

QuantileMap

:: DESCRIPTION

QuantileMap is a visualization tool to compactlydemonstrate multiple (hundreds) distributions in genomic applications.

::DEVELOPER

George C. Tseng 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 QuantileMap

:: MORE INFORMATION

Citation

George C. Tseng. (2009)
Quantile map: Simultaneous visualization of patterns in many distributions with application to tandem mass spectrometry.
Comput Stat Data Anal. 2010 April 1; 54(4): 1124.

SSW – SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications

SSW

:: DESCRIPTION

SSW (Striped-Smith-Waterman-Library) is a fast implementation of the Smith-Waterman algorithm whose API that can be flexibly used by programs written in C, C++ and other languages.

::DEVELOPER

The MarthLab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C/C++ Compiler

:: DOWNLOAD

 SSW

:: MORE INFORMATION

Citation

SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
Mengyao Zhao, Wan-Ping Lee, Erik Garrison, Gabor T. Marth
PLoS One. 2013 Dec 4;8(12):e82138. doi: 10.1371/journal.pone.0082138.