LocusTrack v1 – Integrated Visualisation of GWAS Results and Genomic Annotation

LocusTrack v1

:: DESCRIPTION

LocusTrack is a web-based application that annotates and creates plots of regional GWAS results and incorporates user-specified tracks that display annotations such as linkage disequilibrium (LD), phylogenetic conservation, chromatin state, and other genomic and regulatory elements.

::DEVELOPER

LocusTrack team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

LocusTrack

:: MORE INFORMATION

Citation

LocusTrack: Integrated visualization of GWAS results and genomic annotation.
Cuellar-Partida G, Renteria ME, MacGregor S.
Source Code Biol Med. 2015 Feb 3;10:1. doi: 10.1186/s13029-015-0032-8.

WGAViewer 1.25G – Genomic Annotation of Whole Genome Association Studies

WGAViewer 1.25G

:: DESCRIPTION

WGAViewer is a suite of JAVA software tools that provides a user-friendly interface to annotate, visualize, and help interpret the full set of P values emerging from a whole genome association (WGA) study.

::DEVELOPER

WGAViewer team

:: SCREENSHOTS

:: REQUIREMENTS

Linux / Windows / MacOsX
Java

:: DOWNLOAD

WGAViewer

:: MORE INFORMATION

Citation

WGAViewer: software for genomic annotation of whole genome association studies.
Ge D, Zhang K, Need AC, Martin O, Fellay J, Urban TJ, Telenti A, Goldstein DB.
Genome Res. 2008 Apr;18(4):640-3. Epub 2008 Feb 6.

BIOR 2.2.2 – Rapid, Flexible System for Genomic Annotation

BIOR 2.2.2

:: DESCRIPTION

BioR (Biological Repository) is a toolkit and set of catalogs to retrieve genomic annotation for variants, genes, diseases, conditions, genetic tests, and drugs.

::DEVELOPER

Bioinformatics Program, Division of Biomedical Statistics and Informatics, Mayo Clinic Research

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ Windows/ MacOsX
Java

:: DOWNLOAD

BioR

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Mar 27.
The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation.
Kocher JP1, Quest DJ, Duffy P, Meiners MA, Moore RM, Rider D, Hossain A, Hart SN, Dinu V.

SAGExplore – Map SAGE tags against Genomic Annotation

SAGExplore

:: DESCRIPTION

SAGExplore is a server for the mapping of SAGE tags against a genomic annotation.

::DEVELOPER

Francisco Melo Ledermann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W163-8. Epub 2007 Jul 10.
SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation.
Norambuena T, Malig R, Melo F.