PART / PART-up – Test for the Recurrence of Genomic Aberrations

PART / PART-up

:: DESCRIPTION

PART (parametric aberration recurrence test) is a new parametric method to test for the recurrence of genomic aberrations.

PART-up is an extention of PART to cover unpaired data so that there is a statistical basis for analyzing unpaired genomic data.

::DEVELOPER

Atsushi Niida

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
Java
Perl
R package

:: DOWNLOAD

PART / PART-up

:: MORE INFORMATION

Citation

Niida, A and Imoto, S and Shimamura, T and Miyano, S
Statistical model-based testing to evaluate the recurrence of genomic aberrations
Bioinformatics, 2012, 28:i115-i120

IdeogramBrowser 0.20.4 – Visualization of Genomic Aberrations using Affymetrix SNP Arrays

IdeogramBrowser 0.20.4

:: DESCRIPTION

IdeogramBrowser was specifically designed for use with the Affymetrix SNP arrays. It provides an interactive karyotypic visualization of multiple aberration profiles and direct links to GeneCards.

::DEVELOPER

Medical Systems Biology, University of Ulm

:: SCREENSHOTS

:: REQUIREMENTS

Windows/MacOsX/Linux
Java

:: DOWNLOAD

IdeogramBrowser

:: MORE INFORMATION

Citation

André Müller, Karlheinz Holzmann and Hans A. Kestler
Visualization of genomic aberrations using Affymetrix SNP arrays
Bioinformatics (2007) 23 (4): 496-497.

WIFA 20110617 – Wavelet-based Identification of DNA Focal Genomic Aberrations

WIFA 20110617

:: DESCRIPTION

WIFA is a novel method referred to as the wavelet-based identification of focal genomic aberrations.

::DEVELOPER

Data Mining & Computational Biology Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
MatLab

:: DOWNLOAD

WIFA

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2011 May 11;12:146. doi: 10.1186/1471-2105-12-146.
Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays.
Hur Y1, Lee H.