GWASelect 1.0 – Variable Selection Method for Genomewide Association Studies

GWASelect 1.0

:: DESCRIPTION

GWASelect implements a novel variable selection method for GWAS (Genomewide Association Studies) data and is able to handle more than half million SNPs.

::DEVELOPER

Danyu Lin

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux

:: DOWNLOAD

 GWASelect

:: MORE INFORMATION

Citation

Q. He and D.Y. Lin.
A variable selection method for genome-wide association studies.
Bioinformatics (2010)doi: 10.1093/bioinformatics/btq600

PrivGWAS – Preserving Privacy in Genomewide Association Studies

PrivGWAS

:: DESCRIPTION

PrivGWAS is a set of two methods for performing privacy preserving GWAS in the presence of population stratification: PrivSTRAT and PrivLMM. Both methods allow researched to generate GWAS results while protecting private phenotype information about participants.

::DEVELOPER

Bonnie Berger 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Python

:: DOWNLOAD

PrivGWAS

:: MORE INFORMATION

Citation:

Cell Syst, 3 (1), 54-61 Jul 2016
Enabling Privacy-Preserving GWASs in Heterogeneous Human Populations
Sean Simmons , Cenk Sahinalp , Bonnie Berger