Cinteny – Server for Synteny Identification and Analysis of Genome Rearrangement

Cinteny

:: DESCRIPTION

Cinteny is a flexible and efficient tool for analysis of synteny and evolutionary distances in terms of genome rearrangements (the reversal distance) for multiple genomes. In addition to annotated genomes, which are available for interactive browsing and assessment of synteny and evolutionary distances in terms of orthologous genes, Cinteny can be used with user provided discrete objects, such as sequence tags or other evolutionarily conserved markers.

:: SCREENSHOTS

N/A

::DEVELOPER

Meller Lab

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2007 Mar 8;8:82.
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.
Sinha AU1, Meller J.

GRAPPA 2.0 – Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms

GRAPPA 2.0

:: DESCRIPTION

GRAPPA is software for Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithm.

::DEVELOPER

Bernard Moret

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 GRAPPA 

:: MORE INFORMATION

Citation

Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M.,
A new implementation and detailed study of breakpoint analysis,”
Proc. 6th Pacific Symp. on Biocomputing (PSB 2001), Hawaii, World Scientific Pub. (2001), 583-594.