Merqury v1.3 – Evaluate Genome Assemblies with k-mers

Merqury v1.3

:: DESCRIPTION

Merqury is a novel tool for reference-free assembly evaluation based on efficient k-mer set operations.

::DEVELOPER

Maryland Bioinformatics Labs (MarBL)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

Merqury

:: MORE INFORMATION

Citation

Rhie A, Walenz BP, Koren S, Phillippy AM.
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.
Genome Biol. 2020 Sep 14;21(1):245. doi: 10.1186/s13059-020-02134-9. PMID: 32928274; PMCID: PMC7488777.

TinT – Screening for Nested Transpositions from Genome Assemblies or Trace data

TinT

:: DESCRIPTION

TinT (Transposition in Transposition) affords an easy, automated screening for nested transpositions from genome assemblies or trace data, assembles them in a frequency-matrix, and schematically displays their chronological activity history

::DEVELOPER

Institute of Bioinformatics WWU Muenster

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Window / MacOsX
  • Java

:: DOWNLOAD

 TinT

:: MORE INFORMATION

Citation

Churakov G, Grundmann N, Kuritzin A, Brosius J, Makalowski W, Schmitz J. (2010)
A Novel Web-Based TinT Application and the Chronology of the Primate Alu Retroposon Activity.
BMC Evolutionary Biology 10:376.